This was the 1999–2000 Slovak 1.Liga season, the second level of ice hockey in Slovakia.
| Club | Sp | S | U | N | Tore | Pts | |
|---|---|---|---|---|---|---|---|
| 1. | Martinskeho hokeja club | 44 | 32 | 5 | 7 | 233:106 | 69 |
| 2. | ŠK Iskra Banská Bystrica | 44 | 31 | 2 | 11 | 234:108 | 64 |
| 3. | HK Trnava | 44 | 29 | 4 | 11 | 234:144 | 61 |
| 4. | HC VTJ Topoľčany | 44 | 29 | 3 | 12 | 195:122 | 61 |
| 5. | HK ŠKP Žilina | 44 | 25 | 6 | 13 | 176:136 | 56 |
| 6. | MHC Nitra | 44 | 20 | 4 | 20 | 202:150 | 44 |
| 7. | HK VTJ Farmakol Prešov | 44 | 19 | 5 | 20 | 149:142 | 43 |
| 8. | HKm Zvolen B | 44 | 18 | 5 | 21 | 155:151 | 41 |
| 9. | HK Spartak Dubnica | 44 | 17 | 2 | 25 | 151:191 | 36 |
| 10. | HC VTJ Michalovce | 44 | 9 | 4 | 31 | 133:257 | 22 |
| 11. | HC Dukla Senica | 44 | 7 | 6 | 31 | 106:265 | 20 |
| 12. | HC Polygon Prievidza | 44 | 4 | 2 | 38 | 87:283 | 10 |